System Architecture — Honest Capability Map
DiviScan GH-OS operates a 9-layer decision-governance engine. Each layer contributes a distinct analytical mechanism. The table below discloses the exact mechanism type for every layer — distinguishing hand-coded rules, lookup databases, trained ML models, and LLM API calls. No mechanism is overstated.
| Layer | Component | Mechanism | Description |
|---|---|---|---|
| 4a | Clinical Rules Engine | Rules | 26 hand-coded clinical decision rules for threshold-based alerting |
| 4b | ClinVar Integration | Lookup | 209K variant→disease mappings from NCBI ClinVar database |
| 4c | MIMIC-IV ML Models | Trained Model | 5 disease classifiers with AUC-validated performance scores |
| 4d | ICD-10 Code System | Lookup | 97K diagnostic codes for standardized disease classification |
| 4e | Claude LLM Reasoning | API Call | Open-ended clinical reasoning across any disease via Anthropic Claude |
| 4f | HPO Phenotype Ontology | Lookup | 17,000+ phenotype→disease mappings from Human Phenotype Ontology |
| 4g | DisGeNET | Lookup | 1.1M gene→disease associations for genetic signal detection |
| 4h | Hetionet | Lookup | 2.2M biomedical edges spanning drugs, diseases, genes, and pathways |
| 4i | PrimeKG | Lookup | 8.1M biomedical edges for pathway-level disease reasoning |
Transparency note: Only Layer 4c (MIMIC-IV ML Models) uses trained machine learning classifiers. All other layers operate through deterministic rules, database lookups, or LLM API calls. The system's primary capability is knowledge graph inference combined with LLM reasoning across 17,000+ disease phenotypes — not trained ML models on each disease.
Validation Methodology — U-Metrics Framework
Traditional validation relies on AUC and sensitivity/specificity — metrics that measure model accuracy but not clinical value. A system can be highly accurate yet clinically useless if it surfaces information the clinician already knows. The u-metrics framework addresses this by evaluating clinical utility through a three-condition test that each alert must pass.
The positive identification is clinically correct. The signal corresponds to a true condition or risk present in the patient.
The information is clinically novel. It surfaces something the care team did not already know or had not yet identified.
The alert is actionable by the recipient. Evidence and context are sufficient for a clinician to act without further investigation.
An alert that is RIGHT but not NEW adds noise. An alert that is RIGHT and NEW but not CONVINCING adds cognitive burden without enabling action. Only alerts satisfying all three conditions generate positive clinical utility. The u-metrics framework scores each alert on this three-condition basis, producing a utility score rather than a raw accuracy metric.
Deployment Mode-Specific Utility Scoring
Clinical utility depends on context. A false negative in critical care has different cost than in trial enrollment screening. The u-metrics framework applies different utility weight vectors depending on the deployment mode:
Optimized for early deterioration detection in acute care settings.
- False negative cost: high (missed deterioration)
- Novelty weight: high (alarm fatigue mitigation)
- Convincingness threshold: high (clinician must act rapidly)
Optimized for trial rescue — identifying patients at risk of dropout, adverse events, or missed enrollment.
- False negative cost: very high (lost trial subjects)
- Novelty weight: medium (augments existing monitoring)
- Convincingness threshold: medium (clinical review follows)
Optimized for population-level surveillance and resource allocation decisions.
- False negative cost: medium (population-level tolerance)
- Novelty weight: high (surveillance gaps are the target)
- Convincingness threshold: medium (policy-level action)
Current status: The u-metrics framework is implemented in shadow mode. Utility weights are initialized with default values and are designed to be co-defined with clinical stakeholders during prospective validation. The framework provides the infrastructure for clinically meaningful evaluation — final weight calibration requires real-world clinical input.
MIMIC-IV Trained Classifiers
Five diseases have dedicated machine learning classifiers trained and validated on MIMIC-IV clinical data. These classifiers produce probabilistic risk scores with measurable discriminative performance.
| Disease | AUC Score | Training Data | Status |
|---|---|---|---|
| Heart Failure | 0.890 | MIMIC-IV | Validated |
| Acute Kidney Injury | 0.887 | MIMIC-IV | Validated |
| Type 2 Diabetes | 0.882 | MIMIC-IV | Validated |
| Sepsis | 0.869 | MIMIC-IV | Validated |
| Anemia | 0.815 | MIMIC-IV | Validated |
Scope disclosure: 5 diseases have AUC-validated ML scores. All other disease associations are inferred through knowledge graphs and LLM reasoning, not trained models. The MIMIC-IV classifiers represent one layer of nine in the full decision-governance engine. Model expansion beyond these 5 diseases is underway but not yet deployed.
Knowledge Base Architecture
The decision-governance engine queries across six federated biomedical knowledge bases, providing 11M+ structured relationships for graph-based inference. Each knowledge base serves a distinct role in the diagnostic reasoning pipeline.
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PrimeKG — Biomarker → gene → pathway → disease paths8,100,498
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Hetionet — Drug-disease-gene edges2,250,198
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DisGeNET — Gene → disease associations1,100,000
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HPO (Human Phenotype Ontology) — Phenotype-gene associations; 17K+ phenotype → disease mappings1,080,402
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ClinVar — Variant → disease mappings209,000
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PharmGKB — Pharmacogenomic relationships127,516
Not yet integrated: OMIM (mendelian disease catalog), KEGG (metabolic pathways), Reactome (biological pathway data). Integration of additional knowledge bases is planned for future releases and will expand the inference surface for rare disease detection and metabolic pathway analysis.
What We Can Honestly Claim
Transparent capability disclosure. Each claim is evaluated against the system's current operational state.
| Claim | Status | Basis |
|---|---|---|
| Detects any known disease | YES | LLM reasoning + knowledge graph inference across 6 federated KBs |
| Covers 17,000+ disease phenotypes | YES | HPO phenotype → disease mappings (1,080,402 associations) |
| Probabilistic scores on 5 diseases | YES | MIMIC-IV trained classifiers with AUC 0.815–0.890 |
| Trained on hundreds of diseases | NO | 5 trained classifiers. Expansion underway but not yet deployed. |
| Validated clinical utility | PARTIAL | U-metrics framework implemented; utility weights need clinical stakeholder input |
| FDA cleared or approved | NO | No regulatory submission filed. Pre-submission stage. |
| Prospective clinical results | NO | All validation is retrospective (MIMIC-IV). Prospective validation sought. |
Trial Rescue Simulation
Retrospective simulation on a 40-patient MIMIC-IV cohort modeling three pharmaceutical trial rescue capabilities: biomarker trajectory modeling, subpopulation responder identification, and endpoint risk detection.
| Capability | Description |
|---|---|
| Biomarker Trajectory Modeling | Continuous monitoring of biomarker trends to detect early deviation from expected therapeutic response curves, enabling intervention before protocol-defined failure thresholds are reached. |
| Subpopulation Responder Identification | Graph-based analysis of patient phenotype clusters to identify subgroups with differential treatment response, supporting adaptive enrichment strategies and rescue protocol amendments. |
| Endpoint Risk Detection | Multi-signal analysis of clinical and laboratory data to flag patients at elevated risk of primary endpoint failure, enabling targeted rescue interventions before data lock. |
Important: The $134.8M figure is a retrospective simulation estimate based on MIMIC-IV data applied to published trial cost models. It represents potential recoverable value under modeled conditions — not realized savings. Prospective validation with real trial data is required to confirm these projections.
Current Status & Transparency
Honest assessment of what is operational, what is in progress, and what has not yet been achieved.
Operational
- HyperCore v2.5.0 — 9-layer decision-governance engine fully operational
- 6 federated knowledge bases integrated (HPO, PrimeKG, Hetionet, PharmGKB, ClinVar, DisGeNET)
- Claude LLM reasoning layer — open-ended clinical reasoning across any disease
- 5 MIMIC-IV trained disease classifiers with AUC 0.815–0.890
- U-metrics utility gate — running in shadow mode
- Patent filed — USPTO Provisional #63/706,309
Seeking
- Prospective clinical validation — seeking hospital and pharma pilot partners
- Clinical stakeholder input for u-metrics utility weight calibration
- Model expansion beyond 5 trained classifiers
Not Yet Achieved
- FDA clearance or regulatory approval
- Prospective clinical results
- Dedicated hardware deployment
- Trained model expansion beyond 5 diseases